Antimicrobial and antiviral activities of an actinomycete (Streptomyces sp.) isolated from a Brazilian tropical forest soil

A promising producer of bioactive compounds isolated from a Brazilian tropical soil was tested for its range of antimicrobial activities. Strain 606, classified as Streptomyces sp., could not be identified up to species level, suggesting a possible new taxon. The supernatant and 10 extracts and fractions, obtained by extraction and chromatographic techniques, presented antimicrobial activity using antibiograms. The methanolic fraction was highly active against pathogenic bacteria, phytopathogenic fungi and the human pathogenic yeast Candida albicans. It also possessed high antiviral activity inhibiting the propagation of an acyclovir-resistant herpes simplex virus type 1 strain on HEp-2 cells at non-cytotoxic concentration. The strong cytotoxic effect suggests an antitumour action. This revised version was published online in August 2006 with corrections to the Cover Date.     

The steroidal glycoalkaloid α-tomatine

The literature relating to chemical, biochemical and biological aspects of the steroidal glycoalkaloid, α-tomatine, is reviewed. The alkaloid, which can be used as a starting compound for the synthesis of steroidal hormones, is toxic to a wide range of living organisms. The significance of tomatine to plants which elaborate it is discussed and some possible uses of the compound are mentioned.     

Characterization of Viticultural Terroirs using a Simple Field Model Based on Soil Depth – II. Validation of the Grape Yield and Berry Quality in the Anjou Vineyard (France)

Soil and climate are major constituents of the French notion of Terroir. This concept implies that there is a strong relationship between the composition of the grape, the characteristics of the wine and the territory of production. To study this link, a new method of characterization of the Terroir, including geological and pedological factors, was investigated. It uses a field model based on depth and clay content of soil, together with the degree of weathering of the parent rock. Consequently, for every type of parent rock belonging to a given geologic stage, there are a series of soils that show different stages of pedological evolution. According to the model, three kinds of soils are distinguished with regards to the weathering intensity of the parent rock, that are named weakly weathered rock (WWR), moderately weathered rock (MWR) and strongly weathered rock (SWR). By hypothesis, each soil type is considered as a homogeneous unit for vine production from the viewpoint of ecophysiological factors. Each terroir unit defined by this method is called a Basic Terroir Unit (BTU). To validate this hypothesis, experimental plots planted with Chenin and Cabernet Franc vines were studied over three consecutive seasons (2000–2002), in the Anjou vineyard (Loire Valley – France). The major BTUs developed on the two most important geological systems of Anjou (Brioverian and Ordovician–Devonian), were studied. Results showed that the berries of vines cultivated in WWR were significantly smaller, richer in sugars and anthocyanins and had a Total Phenolic Index higher than those of the vines cultivated in SWR. They also had a lower titratable acidity. Cabernet Franc vines cultivated in MWR had berries with sugar and anthocyanin contents but also total phenolics very close to those of WWR. With Chenin vines there was a good relationship between the global pool of free aromas of berries and the BTU type. The study showed significant relationships between the quality of grapes and the measured values of several ecophysiological variables such as the water supply regime or the timing of budburst.     

Biological control of pedological and hydro-geomorphological processes in a deciduous forest ecosystem

This study describes the effect of soil fauna and vegetation on the development of landscapes and how these actually control soil formation, geomorphological development and hydrological response. The study area is located in a semi-natural deciduous forest on marl in Luxembourg, with a strong texture contrast in the soil at 15–25 cm depth (luvic planosols). The methodology applied is both based on hydrological and geomorphological field measurements on runoff, sediment yield, perched water table dynamics, geomorphological survey, pedological survey and measurements related to in situ ectorganic horizon dynamics and litter decay, soil animal activity, as well as measurements of dynamic soil properties such as soil moisture and swelling and shrinkage. The results show that there is a positive feedback between tree type, soil fauna activity and the development of pipes, partial areas, soils and geomorphology. The landscape can be divided into two main types: Areas where Stellario-Carpinetum vegetation and partial areas are common and areas with Milio-Fagetum vegetation on dry slopes, which are differentiating more and more over time as a result of ongoing geo-ecosystem processes, and which also reflected in their sediment yield. The hydrological response is highly different for both landscape compartments as they are dominated by matrix (Beech) and pipe flow (Hornbeam) respectively. Soil fauna and tree type drive both soil and geomorphological evolution and they both can be considered as important ecosystem engineers.     

The paradox of magnetobiology: Analysis and prospects for solution

The formulation, content, and corollaries of the so-called kT problem are considered. The problem points to a paradox in the biological effect of weak low-frequency magnetic fields. The conventional formulation of the problem contains implicit assumptions that prove not fully valid according to the results of analysis.     

Effect of temperature on the duration of larval and pupal stages of two species of sciomyzid flies, predators of the snail Lymnaea truncatula

The duration of larval and pupal stages of two species of predatory flies was investigated at five constant temperatures. Ilione albiseta (Scopoli): Mean duration of first and second instars was shortest at 23°C and there was 100% survival of first instar larvae at all temperatures. Mean third instar larval duration decreased from 104 days at 17°C to 27.5 days at 26°C. Total percentage larval survival was greatest at 17°C and least at 26°C. Mean pupal duration decreased as temperature increased and this occurred also under outdoor conditions. Pherbellia cinerella (Fallén): As temperature increased mean larval duration decreased but the percentage of larvae pupating also decreased (100% at 14°C, 33.3% at 26°C). There was a trend for shorter mean pupal durations at higher temperatures.

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Résumé L'action de la température a été examinée à 14, 17, 20, 23 et 26°C. Les 2 espèces sont prédatrices de L. truncatula, vecteur de la douve du foie en Irlande, où elle provoque à l'àgriculture une perte évaluée à 10 millions de livres par an. Les données recuellies en conditions contrôlées du laboratoire doivent permettre de définir les conditions optimales pour l'élevage continu de ces espèces. Ceci est indispensable pour évaluer, dans la nature leurs potentialités pour la lutte biologique. Ilione albiseta: C'est à 23°C que le développement des larves de premier et second stades sont les plus brefs; la survie du premier stade est totale à toutes les températures constantes examinées. La durée moyenne du 3ème stade décroît de 104 jours à 17°C jusqu'à 27,5 jours à 26°C. Le taux de survie total est plus élevé à 17°C qu'à 26°C. La durée moyenne de la nymphose diminue quand la température croît, et ceci se produit aussi à la température ambiante extérieure. On réduit de moitié la durée du développement de l'éclosion de l'oeuf à l'apparition de l'adulte, entre la nature et le laboratoire, en utilisant respectivement: 23°, 17° et 26°C pour les premier et second stades, le troisième stade, la nymphé. Cela devrait aider à multiplier la souche pour la lutte biologique. Pherbellia cinerella: Avec élévation de la température la durée du développement larvaire diminue, mais aussi le nombre de larves parvenant à la pupaison (100% à 14° et 33,3% à 26°C). La nymphose tendait à être plus brève aux températures les plus élevées.

     

Potentiality of the cox1 gene in the taxonomic resolution of soil fungi

We explored the potential of the cox1 gene in the species resolution of soil fungi and compared it with the nuclear internal transcribed spacer (ITS) and small subunit (SSU)-rDNA. Conserved primers allowing the amplification of the fungal cox1 gene were designed, and a total of 47 isolates of Zygomycota and Ascomycota were investigated. The analysis revealed a lack of introns in >90% of the isolates. Comparison of the species of each of the six studied genera showed high interspecific sequence polymorphisms. Indeed, the average of nucleotide variations (4.2–11%) according to the genus, due mainly to the nucleotide substitutions, led to the taxonomic resolution of all the species studied regarding both ITS and SSU-rDNA, in which <88% were discriminated. The phylogenetic analysis performed after alignment of the cox1 gene across distant fungal species was in accordance with the well-known taxonomic position of the species studied and no overlap was observed between intra- and interspecific variations. These results clearly demonstrated that the cox1 sequences could provide good molecular markers for the determination of the species composition of environmental samples and constitute an important advance to study soil fungal biodiversity.